dbNSFP_genes
Versions: 4.0
Reference genome builds: None
Type:
hail.Table
Schema (4.0, None)
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Global fields:
None
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Row fields:
'Gene_name': str
'Ensembl_gene': str
'chr': str
'Gene_old_names': str
'Gene_other_names': str
'Uniprot_acc(HGNC/Uniprot)': str
'Uniprot_id(HGNC/Uniprot)': str
'Entrez_gene_id': int32
'CCDS_id': str
'Refseq_id': str
'ucsc_id': str
'MIM_id': str
'OMIM_id': int32
'Gene_full_name': str
'Pathway(Uniprot)': str
'Pathway(BioCarta)_short': str
'Pathway(BioCarta)_full': str
'Pathway(ConsensusPathDB)': str
'Pathway(KEGG)_id': str
'Pathway(KEGG)_full': str
'Function_description': str
'Disease_description': str
'MIM_phenotype_id': str
'MIM_disease': str
'Orphanet_disorder_id': str
'Orphanet_disorder': str
'Orphanet_association_type': str
'Trait_association(GWAS)': str
'GO_biological_process': str
'GO_cellular_component': str
'GO_molecular_function': str
'Tissue_specificity(Uniprot)': str
'Expression(egenetics)': str
'Expression(GNF/Atlas)': str
'Interactions(IntAct)': str
'Interactions(BioGRID)': str
'Interactions(ConsensusPathDB)': str
'P(HI)': float64
'HIPred_score': float64
'HIPred': str
'GHIS': float64
'P(rec)': float64
'Known_rec_info': str
'RVIS_EVS': float64
'RVIS_percentile_EVS': float64
'LoF-FDR_ExAC': float64
'RVIS_ExAC': float64
'RVIS_percentile_ExAC': float64
'ExAC_pLI': float64
'ExAC_pRec': float64
'ExAC_pNull': float64
'ExAC_nonTCGA_pLI': float64
'ExAC_nonTCGA_pRec': float64
'ExAC_nonTCGA_pNull': float64
'ExAC_nonpsych_pLI': float64
'ExAC_nonpsych_pRec': float64
'ExAC_nonpsych_pNull': float64
'gnomAD_pLI': str
'gnomAD_pRec': str
'gnomAD_pNull': str
'ExAC_del.score': float64
'ExAC_dup.score': float64
'ExAC_cnv.score': float64
'ExAC_cnv_flag': str
'GDI': float64
'GDI-Phred': float64
'Gene damage prediction (all disease-causing genes)': str
'Gene damage prediction (all Mendelian disease-causing genes)': str
'Gene damage prediction (Mendelian AD disease-causing genes)': str
'Gene damage prediction (Mendelian AR disease-causing genes)': str
'Gene damage prediction (all PID disease-causing genes)': str
'Gene damage prediction (PID AD disease-causing genes)': str
'Gene damage prediction (PID AR disease-causing genes)': str
'Gene damage prediction (all cancer disease-causing genes)': str
'Gene damage prediction (cancer recessive disease-causing genes)': str
'Gene damage prediction (cancer dominant disease-causing genes)': str
'LoFtool_score': float64
'SORVA_LOF_MAF0.005_HetOrHom': float64
'SORVA_LOF_MAF0.005_HomOrCompoundHet': float64
'SORVA_LOF_MAF0.001_HetOrHom': float64
'SORVA_LOF_MAF0.001_HomOrCompoundHet': float64
'SORVA_LOForMissense_MAF0.005_HetOrHom': float64
'SORVA_LOForMissense_MAF0.005_HomOrCompoundHet': float64
'SORVA_LOForMissense_MAF0.001_HetOrHom': float64
'SORVA_LOForMissense_MAF0.001_HomOrCompoundHet': float64
'Essential_gene': str
'Essential_gene_CRISPR': str
'Essential_gene_CRISPR2': str
'Essential_gene_gene-trap': str
'Gene_indispensability_score': float64
'Gene_indispensability_pred': str
'MGI_mouse_gene': str
'MGI_mouse_phenotype': str
'ZFIN_zebrafish_gene': str
'ZFIN_zebrafish_structure': str
'ZFIN_zebrafish_phenotype_quality': str
'ZFIN_zebrafish_phenotype_tag': str
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Key: ['Gene_name']
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