GTEx_RNA_seq_gene_read_counts
Versions: v7
Reference genome builds: GRCh37
Type:
hail.MatrixTable
Schema (v7, GRCh37)
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Global fields:
'metadata': struct {
name: str,
version: str,
reference_genome: str,
n_rows: int32,
n_cols: int32,
n_partitions: int32
}
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Column fields:
's': str
'subject_id': str
'SMATSSCR': float64
'SMCENTER': str
'SMPTHNTS': str
'SMRIN': float64
'SMTS': str
'SMTSD': str
'SMUBRID': str
'SMTSISCH': float64
'SMTSPAX': float64
'SMNABTCH': str
'SMNABTCHT': str
'SMNABTCHD': str
'SMGEBTCH': str
'SMGEBTCHD': str
'SMGEBTCHT': str
'SMAFRZE': str
'SMGTC': str
'SME2MPRT': float64
'SMCHMPRS': float64
'SMNTRART': float64
'SMNUMGPS': str
'SMMAPRT': float64
'SMEXNCRT': float64
'SM550NRM': str
'SMGNSDTC': float64
'SMUNMPRT': float64
'SM350NRM': str
'SMRDLGTH': float64
'SMMNCPB': str
'SME1MMRT': float64
'SMSFLGTH': float64
'SMESTLBS': float64
'SMMPPD': float64
'SMNTERRT': float64
'SMRRNANM': float64
'SMRDTTL': float64
'SMVQCFL': float64
'SMMNCV': str
'SMTRSCPT': float64
'SMMPPDPR': float64
'SMCGLGTH': str
'SMGAPPCT': str
'SMUNPDRD': float64
'SMNTRNRT': float64
'SMMPUNRT': float64
'SMEXPEFF': float64
'SMMPPDUN': float64
'SME2MMRT': float64
'SME2ANTI': float64
'SMALTALG': float64
'SME2SNSE': float64
'SMMFLGTH': float64
'SME1ANTI': float64
'SMSPLTRD': float64
'SMBSMMRT': float64
'SME1SNSE': float64
'SME1PCTS': float64
'SMRRNART': float64
'SME1MPRT': float64
'SMNUM5CD': str
'SMDPMPRT': float64
'SME2PCTS': float64
'is_female': bool
'age_range': str
'death_classification_hardy_scale': str
----------------------------------------
Row fields:
'gene_id': str
'gene_symbol': str
'gene_interval': interval<locus<GRCh37>>
'source': str
'havana_gene_id': str
'gene_type': str
'gene_status': str
'level': str
'score': float64
'strand': str
'frame': int32
'tag': str
----------------------------------------
Entry fields:
'read_count': int32
----------------------------------------
Column key: ['s']
Row key: ['gene_id']
----------------------------------------