gnomad_lof_metrics

  • Versions: 2.1.1

  • Reference genome builds: None

  • Type: Table

Schema (2.1.1, None)

----------------------------------------
Global fields:
    None
----------------------------------------
Row fields:
    'gene': str
    'transcript': str
    'obs_mis': int32
    'exp_mis': float64
    'oe_mis': float64
    'mu_mis': float64
    'possible_mis': int32
    'obs_mis_pphen': int32
    'exp_mis_pphen': float64
    'oe_mis_pphen': float64
    'possible_mis_pphen': int32
    'obs_syn': int32
    'exp_syn': float64
    'oe_syn': float64
    'mu_syn': float64
    'possible_syn': int32
    'obs_lof': int32
    'mu_lof': float64
    'possible_lof': int32
    'exp_lof': float64
    'pLI': float64
    'pNull': float64
    'pRec': float64
    'oe_lof': float64
    'oe_syn_lower': float64
    'oe_syn_upper': float64
    'oe_mis_lower': float64
    'oe_mis_upper': float64
    'oe_lof_lower': float64
    'oe_lof_upper': float64
    'constraint_flag': str
    'syn_z': float64
    'mis_z': float64
    'lof_z': float64
    'oe_lof_upper_rank': int32
    'oe_lof_upper_bin': int32
    'oe_lof_upper_bin_6': int32
    'n_sites': int32
    'classic_caf': float64
    'max_af': float64
    'no_lofs': int32
    'obs_het_lof': int32
    'obs_hom_lof': int32
    'defined': int32
    'p': float64
    'exp_hom_lof': float64
    'classic_caf_afr': float64
    'classic_caf_amr': float64
    'classic_caf_asj': float64
    'classic_caf_eas': float64
    'classic_caf_fin': float64
    'classic_caf_nfe': float64
    'classic_caf_oth': float64
    'classic_caf_sas': float64
    'p_afr': float64
    'p_amr': float64
    'p_asj': float64
    'p_eas': float64
    'p_fin': float64
    'p_nfe': float64
    'p_oth': float64
    'p_sas': float64
    'transcript_type': str
    'gene_id': str
    'transcript_level': int32
    'cds_length': int32
    'num_coding_exons': int32
    'gene_type': str
    'gene_length': int32
    'exac_pLI': float64
    'exac_obs_lof': int32
    'exac_exp_lof': float64
    'exac_oe_lof': float64
    'brain_expression': str
    'chromosome': str
    'start_position': int32
    'end_position': int32
----------------------------------------
Key: ['gene']
----------------------------------------