UK_Biobank_Rapid_GWAS_female
Versions: v2
Reference genome builds: GRCh37
Type:
hail.MatrixTable
Schema (v2, GRCh37)
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Global fields:
'metadata': struct {
name: str,
version: str,
reference_genome: str,
n_rows: int32,
n_cols: int32,
n_partitions: int32
}
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Column fields:
'phenotype': str
'description': str
'variable_type': str
'source': str
'n_non_missing': int32
'n_missing': int32
'n_controls': int32
'n_cases': int32
'PHESANT_transformation': str
'notes': str
----------------------------------------
Row fields:
'locus': locus<GRCh37>
'alleles': array<str>
'variant': str
'minor_allele': str
'minor_AF': float64
'rsid': str
'varid': str
'consequence': str
'consequence_category': str
'info': float64
'call_rate': float64
'alt_AC': int32
'AF': float64
'p_hwe': float64
'n_called': int32
'n_not_called': int32
'n_hom_ref': int32
'n_het': int32
'n_hom_var': int32
'n_non_ref': int32
'r_heterozygosity': float64
'r_het_hom_var': float64
'r_expected_het_frequency': float64
----------------------------------------
Entry fields:
'expected_case_minor_AC': float64
'expected_min_category_minor_AC': float64
'low_confidence_variant': bool
'n_complete_samples': int32
'AC': float64
'ytx': float64
'beta': float64
'se': float64
'tstat': float64
'pval': float64
----------------------------------------
Column key: ['phenotype']
Row key: ['locus', 'alleles']
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