gnomad_variant_co-occurrence

• Versions: 2.1.1

• Reference genome builds: GRCh37

• Type: hail.Table

Schema (2.1.1, GRCh37)

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Global fields:
    'max_freq': float64
    'least_consequence': str
    'same_haplotype_em_probability_cutoff': float64
    'different_haplotypes_em_probability_cutoff': float64
    'global_annotation_descriptions': struct {
        max_freq: str,
        least_consequence: str,
        same_haplotype_em_probability_cutoff: str,
        different_haplotypes_em_probability_cutoff: str
    }
    'row_annotation_descriptions': struct {
        locus1: str,
        alleles1: str,
        locus2: str,
        alleles2: str,
        phase_info: struct {
            description: str,
            gt_counts: str,
            em: struct {
                hap_counts: str,
                p_chet: str,
                same_haplotype: str,
                different_haplotype: str
            }
        }
    }
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Row fields:
    'locus1': locus<GRCh37>
    'alleles1': array<str>
    'locus2': locus<GRCh37>
    'alleles2': array<str>
    'phase_info': dict<str, struct {
        gt_counts: array<int32>,
        em: struct {
            hap_counts: array<float64>,
            p_chet: float64,
            same_haplotype: bool,
            different_haplotype: bool
        }
    }>
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Key: ['locus1', 'alleles1', 'locus2', 'alleles2']
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