ldsc_baselineLD_annotations
Versions: 2.2
Reference genome builds: GRCh37
Type:
hail.Table
Schema (2.2, GRCh37)
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Global fields:
'metadata': struct {
name: str,
reference_genome: str,
n_rows: int32,
n_partitions: int32
}
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Row fields:
'SNP': str
'baseL2': float64
'Coding_UCSCL2': float64
'Coding_UCSC.flanking.500L2': float64
'Conserved_LindbladTohL2': float64
'Conserved_LindbladToh.flanking.500L2': float64
'CTCF_HoffmanL2': float64
'CTCF_Hoffman.flanking.500L2': float64
'DGF_ENCODEL2': float64
'DGF_ENCODE.flanking.500L2': float64
'DHS_peaks_TrynkaL2': float64
'DHS_TrynkaL2': float64
'DHS_Trynka.flanking.500L2': float64
'Enhancer_AnderssonL2': float64
'Enhancer_Andersson.flanking.500L2': float64
'Enhancer_HoffmanL2': float64
'Enhancer_Hoffman.flanking.500L2': float64
'FetalDHS_TrynkaL2': float64
'FetalDHS_Trynka.flanking.500L2': float64
'H3K27ac_HniszL2': float64
'H3K27ac_Hnisz.flanking.500L2': float64
'H3K27ac_PGC2L2': float64
'H3K27ac_PGC2.flanking.500L2': float64
'H3K4me1_peaks_TrynkaL2': float64
'H3K4me1_TrynkaL2': float64
'H3K4me1_Trynka.flanking.500L2': float64
'H3K4me3_peaks_TrynkaL2': float64
'H3K4me3_TrynkaL2': float64
'H3K4me3_Trynka.flanking.500L2': float64
'H3K9ac_peaks_TrynkaL2': float64
'H3K9ac_TrynkaL2': float64
'H3K9ac_Trynka.flanking.500L2': float64
'Intron_UCSCL2': float64
'Intron_UCSC.flanking.500L2': float64
'PromoterFlanking_HoffmanL2': float64
'PromoterFlanking_Hoffman.flanking.500L2': float64
'Promoter_UCSCL2': float64
'Promoter_UCSC.flanking.500L2': float64
'Repressed_HoffmanL2': float64
'Repressed_Hoffman.flanking.500L2': float64
'SuperEnhancer_HniszL2': float64
'SuperEnhancer_Hnisz.flanking.500L2': float64
'TFBS_ENCODEL2': float64
'TFBS_ENCODE.flanking.500L2': float64
'Transcr_HoffmanL2': float64
'Transcr_Hoffman.flanking.500L2': float64
'TSS_HoffmanL2': float64
'TSS_Hoffman.flanking.500L2': float64
'UTR_3_UCSCL2': float64
'UTR_3_UCSC.flanking.500L2': float64
'UTR_5_UCSCL2': float64
'UTR_5_UCSC.flanking.500L2': float64
'WeakEnhancer_HoffmanL2': float64
'WeakEnhancer_Hoffman.flanking.500L2': float64
'GERP.NSL2': float64
'GERP.RSsup4L2': float64
'MAFbin1L2': float64
'MAFbin2L2': float64
'MAFbin3L2': float64
'MAFbin4L2': float64
'MAFbin5L2': float64
'MAFbin6L2': float64
'MAFbin7L2': float64
'MAFbin8L2': float64
'MAFbin9L2': float64
'MAFbin10L2': float64
'MAF_Adj_Predicted_Allele_AgeL2': float64
'MAF_Adj_LLD_AFRL2': float64
'Recomb_Rate_10kbL2': float64
'Nucleotide_Diversity_10kbL2': float64
'Backgrd_Selection_StatL2': float64
'CpG_Content_50kbL2': float64
'MAF_Adj_ASMCL2': float64
'GTEx_eQTL_MaxCPPL2': float64
'BLUEPRINT_H3K27acQTL_MaxCPPL2': float64
'BLUEPRINT_H3K4me1QTL_MaxCPPL2': float64
'BLUEPRINT_DNA_methylation_MaxCPPL2': float64
'synonymousL2': float64
'non_synonymousL2': float64
'Conserved_Vertebrate_phastCons46wayL2': float64
'Conserved_Vertebrate_phastCons46way.flanking.500L2': float64
'Conserved_Mammal_phastCons46wayL2': float64
'Conserved_Mammal_phastCons46way.flanking.500L2': float64
'Conserved_Primate_phastCons46wayL2': float64
'Conserved_Primate_phastCons46way.flanking.500L2': float64
'BivFlnkL2': float64
'BivFlnk.flanking.500L2': float64
'Human_Promoter_VillarL2': float64
'Human_Promoter_Villar.flanking.500L2': float64
'Human_Enhancer_VillarL2': float64
'Human_Enhancer_Villar.flanking.500L2': float64
'Ancient_Sequence_Age_Human_PromoterL2': float64
'Ancient_Sequence_Age_Human_Promoter.flanking.500L2': float64
'Ancient_Sequence_Age_Human_EnhancerL2': float64
'Ancient_Sequence_Age_Human_Enhancer.flanking.500L2': float64
'Human_Enhancer_Villar_Species_Enhancer_CountL2': float64
'Human_Promoter_Villar_ExACL2': float64
'Human_Promoter_Villar_ExAC.flanking.500L2': float64
'locus': locus<GRCh37>
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Key: ['locus']
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