ldsc_baselineLD_annotations

  • Versions: 2.2

  • Reference genome builds: GRCh37

  • Type: hail.Table

Schema (2.2, GRCh37)

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Global fields:
    'metadata': struct {
        name: str,
        reference_genome: str,
        n_rows: int32,
        n_partitions: int32
    }
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Row fields:
    'SNP': str
    'baseL2': float64
    'Coding_UCSCL2': float64
    'Coding_UCSC.flanking.500L2': float64
    'Conserved_LindbladTohL2': float64
    'Conserved_LindbladToh.flanking.500L2': float64
    'CTCF_HoffmanL2': float64
    'CTCF_Hoffman.flanking.500L2': float64
    'DGF_ENCODEL2': float64
    'DGF_ENCODE.flanking.500L2': float64
    'DHS_peaks_TrynkaL2': float64
    'DHS_TrynkaL2': float64
    'DHS_Trynka.flanking.500L2': float64
    'Enhancer_AnderssonL2': float64
    'Enhancer_Andersson.flanking.500L2': float64
    'Enhancer_HoffmanL2': float64
    'Enhancer_Hoffman.flanking.500L2': float64
    'FetalDHS_TrynkaL2': float64
    'FetalDHS_Trynka.flanking.500L2': float64
    'H3K27ac_HniszL2': float64
    'H3K27ac_Hnisz.flanking.500L2': float64
    'H3K27ac_PGC2L2': float64
    'H3K27ac_PGC2.flanking.500L2': float64
    'H3K4me1_peaks_TrynkaL2': float64
    'H3K4me1_TrynkaL2': float64
    'H3K4me1_Trynka.flanking.500L2': float64
    'H3K4me3_peaks_TrynkaL2': float64
    'H3K4me3_TrynkaL2': float64
    'H3K4me3_Trynka.flanking.500L2': float64
    'H3K9ac_peaks_TrynkaL2': float64
    'H3K9ac_TrynkaL2': float64
    'H3K9ac_Trynka.flanking.500L2': float64
    'Intron_UCSCL2': float64
    'Intron_UCSC.flanking.500L2': float64
    'PromoterFlanking_HoffmanL2': float64
    'PromoterFlanking_Hoffman.flanking.500L2': float64
    'Promoter_UCSCL2': float64
    'Promoter_UCSC.flanking.500L2': float64
    'Repressed_HoffmanL2': float64
    'Repressed_Hoffman.flanking.500L2': float64
    'SuperEnhancer_HniszL2': float64
    'SuperEnhancer_Hnisz.flanking.500L2': float64
    'TFBS_ENCODEL2': float64
    'TFBS_ENCODE.flanking.500L2': float64
    'Transcr_HoffmanL2': float64
    'Transcr_Hoffman.flanking.500L2': float64
    'TSS_HoffmanL2': float64
    'TSS_Hoffman.flanking.500L2': float64
    'UTR_3_UCSCL2': float64
    'UTR_3_UCSC.flanking.500L2': float64
    'UTR_5_UCSCL2': float64
    'UTR_5_UCSC.flanking.500L2': float64
    'WeakEnhancer_HoffmanL2': float64
    'WeakEnhancer_Hoffman.flanking.500L2': float64
    'GERP.NSL2': float64
    'GERP.RSsup4L2': float64
    'MAFbin1L2': float64
    'MAFbin2L2': float64
    'MAFbin3L2': float64
    'MAFbin4L2': float64
    'MAFbin5L2': float64
    'MAFbin6L2': float64
    'MAFbin7L2': float64
    'MAFbin8L2': float64
    'MAFbin9L2': float64
    'MAFbin10L2': float64
    'MAF_Adj_Predicted_Allele_AgeL2': float64
    'MAF_Adj_LLD_AFRL2': float64
    'Recomb_Rate_10kbL2': float64
    'Nucleotide_Diversity_10kbL2': float64
    'Backgrd_Selection_StatL2': float64
    'CpG_Content_50kbL2': float64
    'MAF_Adj_ASMCL2': float64
    'GTEx_eQTL_MaxCPPL2': float64
    'BLUEPRINT_H3K27acQTL_MaxCPPL2': float64
    'BLUEPRINT_H3K4me1QTL_MaxCPPL2': float64
    'BLUEPRINT_DNA_methylation_MaxCPPL2': float64
    'synonymousL2': float64
    'non_synonymousL2': float64
    'Conserved_Vertebrate_phastCons46wayL2': float64
    'Conserved_Vertebrate_phastCons46way.flanking.500L2': float64
    'Conserved_Mammal_phastCons46wayL2': float64
    'Conserved_Mammal_phastCons46way.flanking.500L2': float64
    'Conserved_Primate_phastCons46wayL2': float64
    'Conserved_Primate_phastCons46way.flanking.500L2': float64
    'BivFlnkL2': float64
    'BivFlnk.flanking.500L2': float64
    'Human_Promoter_VillarL2': float64
    'Human_Promoter_Villar.flanking.500L2': float64
    'Human_Enhancer_VillarL2': float64
    'Human_Enhancer_Villar.flanking.500L2': float64
    'Ancient_Sequence_Age_Human_PromoterL2': float64
    'Ancient_Sequence_Age_Human_Promoter.flanking.500L2': float64
    'Ancient_Sequence_Age_Human_EnhancerL2': float64
    'Ancient_Sequence_Age_Human_Enhancer.flanking.500L2': float64
    'Human_Enhancer_Villar_Species_Enhancer_CountL2': float64
    'Human_Promoter_Villar_ExACL2': float64
    'Human_Promoter_Villar_ExAC.flanking.500L2': float64
    'locus': locus<GRCh37>
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Key: ['locus']
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