Hail 0.2

Hail is an open-source library for scalable data exploration and analysis, with a particular emphasis on genomics. See the overview for a high-level walkthrough of the library, the GWAS tutorial for a simple example of conducting a genome-wide association study, and the installation page to get started using Hail.

Contents

• Installation
  • Mac OS X
  • Linux
  • Google Dataproc
  • Azure HDInsight
  • Other Spark Clusters
  • After installation, try your first Hail query
• Hail on the Cloud
  • General Advice
  • Query-on-Batch
  • Google Cloud
  • Microsoft Azure
  • Amazon Web Services
  • Databricks
• Tutorials
  • Genome-Wide Association Study (GWAS) Tutorial
  • Table Tutorial
  • Aggregation Tutorial
  • Filtering and Annotation Tutorial
  • Table Joins Tutorial
  • MatrixTable Tutorial
  • Plotting Tutorial
  • GGPlot Tutorial
• Reference (Python API)
  • hail
  • hailtop.fs
  • hailtop.batch
• Configuration Reference
  • Supported Configuration Variables
• Overview
  • Expressions
  • Tables
  • MatrixTables
• How-To Guides
  • Aggregation
  • Annotation (Adding Fields)
  • Genetics
• Cheatsheets
• Datasets
  • Schemas
• Annotation Database
  • Database Query
• Libraries
  • gnomad (Hail Utilities for gnomAD)
• For Software Developers
  • Requirements
  • Building Hail
  • Building the Docs and Website
  • Running the tests
  • Contributing
• Other Resources
  • Hadoop Glob Patterns
• Change Log And Version Policy
  • Python Version Compatibility Policy
  • Frequently Asked Questions
  • Version 0.2.133
  • Version 0.2.132
  • Version 0.2.131
  • Version 0.2.130
  • Version 0.2.129
  • Version 0.2.128
  • Version 0.2.127
  • Version 0.2.126
  • Version 0.2.125
  • Version 0.2.124
  • Version 0.2.123
  • Version 0.2.122
  • Version 0.2.121
  • Version 0.2.120
  • Version 0.2.119
  • Version 0.2.118
  • Version 0.2.117
  • Version 0.2.116
  • Version 0.2.115
  • Version 0.2.114
  • Version 0.2.113
  • Version 0.2.112
  • Version 0.2.111
  • Version 0.2.110
  • Version 0.2.109
  • Version 0.2.108
  • Version 0.2.107
  • Version 0.2.106
  • Version 0.2.105
  • Version 0.2.104
  • Version 0.2.103
  • Version 0.2.102
  • Version 0.2.101
  • Version 0.2.100
  • Version 0.2.99
  • Version 0.2.98
  • Version 0.2.97
  • Version 0.2.96
  • Version 0.2.95
  • Version 0.2.94
  • Version 0.2.93
  • Version 0.2.92
  • Version 0.2.91
  • Version 0.2.90
  • Version 0.2.89
  • Version 0.2.88
  • Version 0.2.87
  • Version 0.2.86
  • Version 0.2.85
  • Version 0.2.84
  • Version 0.2.83
  • Version 0.2.82
  • Version 0.2.81
  • Version 0.2.80
  • Version 0.2.79
  • Version 0.2.78
  • Version 0.2.77
  • Version 0.2.76
  • Version 0.2.75
  • Version 0.2.74
  • Version 0.2.73
  • Version 0.2.72
  • Version 0.2.71
  • Version 0.2.70
  • Version 0.2.69
  • Version 0.2.68
  • Version 0.2.67
  • Version 0.2.66
  • Version 0.2.65
  • Version 0.2.64
  • Version 0.2.63
  • Version 0.2.62
  • Version 0.2.61
  • Version 0.2.60
  • Version 0.2.59
  • Version 0.2.58
  • Version 0.2.57
  • Version 0.2.56
  • Version 0.2.55
  • Version 0.2.54
  • Version 0.2.53
  • Version 0.2.52
  • Version 0.2.51
  • Version 0.2.50
  • Version 0.2.49
  • Version 0.2.48
  • Version 0.2.47
  • Version 0.2.46
  • Version 0.2.45
  • Version 0.2.44
  • Version 0.2.43
  • Version 0.2.42
  • Version 0.2.41
  • Version 0.2.40
  • Version 0.2.39
  • Version 0.2.38
  • Version 0.2.37
  • Version 0.2.36
  • Version 0.2.35
  • Version 0.2.34
  • Version 0.2.33
  • Version 0.2.32
  • Version 0.2.31
  • Version 0.2.30
  • Version 0.2.29
  • Version 0.2.28
  • Version 0.2.27
  • Version 0.2.26
  • Version 0.2.25
  • Version 0.2.24
  • Version 0.2.23
  • Version 0.2.22
  • Version 0.2.21
  • Version 0.2.20
  • Version 0.2.19
  • Version 0.2.18
  • Version 0.2.17
  • Version 0.2.16
  • Version 0.2.15
  • Version 0.2.14
  • Version 0.2.13
  • Version 0.2.12
  • Version 0.2.11
  • Version 0.2.10
  • Version 0.2.9
  • Version 0.2.8
  • Version 0.2.7
  • Version 0.2.6
  • Version 0.2.5
  • Version 0.2.4: Beginning of history!

Indices and tables

• Index

If you would like to refer to our Hail v0.1 (deprecated) docs, please view Hail 0.1 docs