dbSNP
Versions: 154
Reference genome builds: GRCh37, GRCh38
Type:
hail.Table
Schema (154, GRCh37)
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Global fields:
'metadata': struct {
name: str,
version: str,
reference_genome: str,
n_rows: int32,
n_partitions: int32
}
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Row fields:
'locus': locus<GRCh37>
'alleles': array<str>
'rsid': str
'qual': float64
'filters': set<str>
'info': struct {
RS: int32,
GENEINFO: str,
PSEUDOGENEINFO: str,
dbSNPBuildID: int32,
SAO: int32,
SSR: int32,
VC: str,
PM: bool,
NSF: bool,
NSM: bool,
NSN: bool,
SYN: bool,
U3: bool,
U5: bool,
ASS: bool,
DSS: bool,
INT: bool,
R3: bool,
R5: bool,
GNO: bool,
PUB: bool,
FREQ: struct {
_GENOME_DK: float64,
_TWINSUK: float64,
_dbGaP_PopFreq: float64,
_Siberian: float64,
_Chileans: float64,
_FINRISK: float64,
_HapMap: float64,
_Estonian: float64,
_ALSPAC: float64,
_GoESP: float64,
_TOPMED: float64,
_PAGE_STUDY: float64,
_1000Genomes: float64,
_Korea1K: float64,
_ChromosomeY: float64,
_ExAC: float64,
_Qatari: float64,
_GoNL: float64,
_MGP: float64,
_GnomAD: float64,
_Vietnamese: float64,
_GnomAD_exomes: float64,
_PharmGKB: float64,
_KOREAN: float64,
_Daghestan: float64,
_HGDP_Stanford: float64,
_NorthernSweden: float64,
_SGDP_PRJ: float64
},
COMMON: bool,
CLNHGVS: array<str>,
CLNVI: array<str>,
CLNORIGIN: array<str>,
CLNSIG: array<str>,
CLNDISDB: array<str>,
CLNDN: array<str>,
CLNREVSTAT: array<str>,
CLNACC: array<str>
}
'a_index': int32
'was_split': bool
'old_locus': locus<GRCh37>
'old_alleles': array<str>
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Key: ['locus', 'alleles']
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