panukb_summary_stats

• Versions: 0.3

• Reference genome builds: GRCh37

• Type: hail.MatrixTable

Schema (0.3, GRCh37)

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Global fields:
    None
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Column fields:
    'trait_type': str
    'phenocode': str
    'pheno_sex': str
    'coding': str
    'modifier': str
    'pheno_data': array<struct {
        n_cases: int32,
        n_controls: int32,
        heritability: float64,
        saige_version: str,
        inv_normalized: bool,
        pop: str
    }>
    'description': str
    'description_more': str
    'coding_description': str
    'category': str
    'n_cases_full_cohort_both_sexes': int64
    'n_cases_full_cohort_females': int64
    'n_cases_full_cohort_males': int64
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Row fields:
    'locus': locus<GRCh37>
    'alleles': array<str>
    'gene': str
    'annotation': str
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Entry fields:
    'summary_stats': array<struct {
        AF_Allele2: float64,
        imputationInfo: float64,
        BETA: float64,
        SE: float64,
        `p.value.NA`: float64,
        `AF.Cases`: float64,
        `AF.Controls`: float64,
        Pvalue: float64,
        low_confidence: bool
    }>
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Column key: ['trait_type', 'phenocode', 'pheno_sex', 'coding', 'modifier']
Row key: ['locus', 'alleles']
----------------------------------------