dbNSFP_variants
Versions: 4.0
Reference genome builds: GRCh37, GRCh38
Type:
hail.Table
Schema (4.0, GRCh37)
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Global fields:
None
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Row fields:
'pos(1-based)': int32
'ref': str
'alt': str
'aaref': str
'aaalt': str
'rs_dbSNP151': str
'hg19_chr': str
'hg19_pos(1-based)': int32
'hg18_chr': str
'hg18_pos(1-based)': int32
'aapos': str
'genename': str
'Ensembl_geneid': str
'Ensembl_transcriptid': str
'Ensembl_proteinid': str
'Uniprot_acc': str
'Uniprot_entry': str
'HGVSc_ANNOVAR': str
'HGVSp_ANNOVAR': str
'HGVSc_snpEff': str
'HGVSp_snpEff': str
'HGVSc_VEP': str
'HGVSp_VEP': str
'APPRIS': str
'GENCODE_basic': str
'TSL': str
'VEP_canonical': str
'cds_strand': str
'refcodon': str
'codonpos': str
'codon_degeneracy': str
'Ancestral_allele': str
'AltaiNeandertal': str
'Denisova': str
'VindijiaNeandertal': str
'SIFT_score': str
'SIFT_converted_rankscore': float64
'SIFT_pred': str
'SIFT4G_score': str
'SIFT4G_converted_rankscore': float64
'SIFT4G_pred': str
'Polyphen2_HDIV_score': str
'Polyphen2_HDIV_rankscore': float64
'Polyphen2_HDIV_pred': str
'Polyphen2_HVAR_score': str
'Polyphen2_HVAR_rankscore': float64
'Polyphen2_HVAR_pred': str
'LRT_score': float64
'LRT_converted_rankscore': float64
'LRT_pred': str
'LRT_Omega': float64
'MutationTaster_score': str
'MutationTaster_converted_rankscore': float64
'MutationTaster_pred': str
'MutationTaster_model': str
'MutationTaster_AAE': str
'MutationAssessor_score': str
'MutationAssessor_rankscore': float64
'MutationAssessor_pred': str
'FATHMM_score': str
'FATHMM_converted_rankscore': float64
'FATHMM_pred': str
'PROVEAN_score': str
'PROVEAN_converted_rankscore': float64
'PROVEAN_pred': str
'VEST4_score': str
'VEST4_rankscore': float64
'MetaSVM_score': float64
'MetaSVM_rankscore': float64
'MetaSVM_pred': str
'MetaLR_score': float64
'MetaLR_rankscore': float64
'MetaLR_pred': str
'Reliability_index': int32
'M-CAP_score': float64
'M-CAP_rankscore': float64
'M-CAP_pred': str
'REVEL_score': float64
'REVEL_rankscore': float64
'MutPred_score': str
'MutPred_rankscore': float64
'MutPred_protID': str
'MutPred_AAchange': str
'MutPred_Top5features': str
'MVP_score': str
'MVP_rankscore': float64
'MPC_score': str
'MPC_rankscore': float64
'PrimateAI_score': float64
'PrimateAI_rankscore': float64
'PrimateAI_pred': str
'DEOGEN2_score': str
'DEOGEN2_rankscore': float64
'DEOGEN2_pred': str
'Aloft_Fraction_transcripts_affected': str
'Aloft_prob_Tolerant': str
'Aloft_prob_Recessive': str
'Aloft_prob_Dominant': str
'Aloft_pred': str
'Aloft_Confidence': str
'CADD_raw': float64
'CADD_raw_rankscore': float64
'CADD_phred': float64
'DANN_score': float64
'DANN_rankscore': float64
'fathmm-MKL_coding_score': float64
'fathmm-MKL_coding_rankscore': float64
'fathmm-MKL_coding_pred': str
'fathmm-MKL_coding_group': str
'fathmm-XF_coding_score': float64
'fathmm-XF_coding_rankscore': float64
'fathmm-XF_coding_pred': str
'Eigen-raw_coding': float64
'Eigen-raw_coding_rankscore': float64
'Eigen-pred_coding': float64
'Eigen-PC-raw_coding': float64
'Eigen-PC-raw_coding_rankscore': float64
'Eigen-PC-phred_coding': float64
'GenoCanyon_score': float64
'GenoCanyon_rankscore': float64
'integrated_fitCons_score': float64
'integrated_fitCons_rankscore': float64
'integrated_confidence_value': int32
'GM12878_fitCons_score': float64
'GM12878_fitCons_rankscore': float64
'GM12878_confidence_value': int32
'H1-hESC_fitCons_score': float64
'H1-hESC_fitCons_rankscore': float64
'H1-hESC_confidence_value': int32
'HUVEC_fitCons_score': float64
'HUVEC_fitCons_rankscore': float64
'HUVEC_confidence_value': int32
'LINSIGHT': float64
'LINSIGHT_rankscore': float64
'GERP++_NR': float64
'GERP++_RS': float64
'GERP++_RS_rankscore': float64
'phyloP100way_vertebrate': float64
'phyloP100way_vertebrate_rankscore': float64
'phyloP30way_mammalian': float64
'phyloP30way_mammalian_rankscore': float64
'phyloP17way_primate': float64
'phyloP17way_primate_rankscore': float64
'phastCons100way_vertebrate': float64
'phastCons100way_vertebrate_rankscore': float64
'phastCons30way_mammalian': float64
'phastCons30way_mammalian_rankscore': float64
'phastCons17way_primate': float64
'phastCons17way_primate_rankscore': float64
'SiPhy_29way_pi': str
'SiPhy_29way_logOdds': float64
'SiPhy_29way_logOdds_rankscore': float64
'bStatistic': int32
'bStatistic_rankscore': float64
'1000Gp3_AC': int32
'1000Gp3_AF': float64
'1000Gp3_AFR_AC': int32
'1000Gp3_AFR_AF': float64
'1000Gp3_EUR_AC': int32
'1000Gp3_EUR_AF': float64
'1000Gp3_AMR_AC': int32
'1000Gp3_AMR_AF': float64
'1000Gp3_EAS_AC': int32
'1000Gp3_EAS_AF': float64
'1000Gp3_SAS_AC': int32
'1000Gp3_SAS_AF': float64
'TWINSUK_AC': int32
'TWINSUK_AF': float64
'ALSPAC_AC': int32
'ALSPAC_AF': float64
'UK10K_AC': int32
'UK10K_AF': float64
'ESP6500_AA_AC': int32
'ESP6500_AA_AF': float64
'ESP6500_EA_AC': int32
'ESP6500_EA_AF': float64
'ExAC_AC': int32
'ExAC_AF': float64
'ExAC_Adj_AC': int32
'ExAC_Adj_AF': float64
'ExAC_AFR_AC': int32
'ExAC_AFR_AF': float64
'ExAC_AMR_AC': int32
'ExAC_AMR_AF': float64
'ExAC_EAS_AC': int32
'ExAC_EAS_AF': float64
'ExAC_FIN_AC': int32
'ExAC_FIN_AF': float64
'ExAC_NFE_AC': int32
'ExAC_NFE_AF': float64
'ExAC_SAS_AC': int32
'ExAC_SAS_AF': float64
'ExAC_nonTCGA_AC': int32
'ExAC_nonTCGA_AF': float64
'ExAC_nonTCGA_Adj_AC': int32
'ExAC_nonTCGA_Adj_AF': float64
'ExAC_nonTCGA_AFR_AC': int32
'ExAC_nonTCGA_AFR_AF': float64
'ExAC_nonTCGA_AMR_AC': int32
'ExAC_nonTCGA_AMR_AF': float64
'ExAC_nonTCGA_EAS_AC': int32
'ExAC_nonTCGA_EAS_AF': float64
'ExAC_nonTCGA_FIN_AC': int32
'ExAC_nonTCGA_FIN_AF': float64
'ExAC_nonTCGA_NFE_AC': int32
'ExAC_nonTCGA_NFE_AF': float64
'ExAC_nonTCGA_SAS_AC': int32
'ExAC_nonTCGA_SAS_AF': float64
'ExAC_nonpsych_AC': int32
'ExAC_nonpsych_AF': float64
'ExAC_nonpsych_Adj_AC': int32
'ExAC_nonpsych_Adj_AF': float64
'ExAC_nonpsych_AFR_AC': int32
'ExAC_nonpsych_AFR_AF': float64
'ExAC_nonpsych_AMR_AC': int32
'ExAC_nonpsych_AMR_AF': float64
'ExAC_nonpsych_EAS_AC': int32
'ExAC_nonpsych_EAS_AF': float64
'ExAC_nonpsych_FIN_AC': int32
'ExAC_nonpsych_FIN_AF': float64
'ExAC_nonpsych_NFE_AC': int32
'ExAC_nonpsych_NFE_AF': float64
'ExAC_nonpsych_SAS_AC': int32
'ExAC_nonpsych_SAS_AF': float64
'gnomAD_exomes_flag': str
'gnomAD_exomes_AC': int32
'gnomAD_exomes_AN': int32
'gnomAD_exomes_AF': float64
'gnomAD_exomes_nhomalt': int32
'gnomAD_exomes_AFR_AC': int32
'gnomAD_exomes_AFR_AN': int32
'gnomAD_exomes_AFR_AF': float64
'gnomAD_exomes_AFR_nhomalt': int32
'gnomAD_exomes_AMR_AC': int32
'gnomAD_exomes_AMR_AN': int32
'gnomAD_exomes_AMR_AF': float64
'gnomAD_exomes_AMR_nhomalt': int32
'gnomAD_exomes_ASJ_AC': int32
'gnomAD_exomes_ASJ_AN': int32
'gnomAD_exomes_ASJ_AF': float64
'gnomAD_exomes_ASJ_nhomalt': int32
'gnomAD_exomes_EAS_AC': int32
'gnomAD_exomes_EAS_AN': int32
'gnomAD_exomes_EAS_AF': float64
'gnomAD_exomes_EAS_nhomalt': int32
'gnomAD_exomes_FIN_AC': int32
'gnomAD_exomes_FIN_AN': int32
'gnomAD_exomes_FIN_AF': float64
'gnomAD_exomes_FIN_nhomalt': int32
'gnomAD_exomes_NFE_AC': int32
'gnomAD_exomes_NFE_AN': int32
'gnomAD_exomes_NFE_AF': float64
'gnomAD_exomes_NFE_nhomalt': int32
'gnomAD_exomes_SAS_AC': int32
'gnomAD_exomes_SAS_AN': int32
'gnomAD_exomes_SAS_AF': float64
'gnomAD_exomes_SAS_nhomalt': int32
'gnomAD_exomes_POPMAX_AC': int32
'gnomAD_exomes_POPMAX_AN': int32
'gnomAD_exomes_POPMAX_AF': float64
'gnomAD_exomes_POPMAX_nhomalt': int32
'gnomAD_exomes_controls_AC': int32
'gnomAD_exomes_controls_AN': int32
'gnomAD_exomes_controls_AF': float64
'gnomAD_exomes_controls_nhomalt': int32
'gnomAD_exomes_controls_AFR_AC': int32
'gnomAD_exomes_controls_AFR_AN': int32
'gnomAD_exomes_controls_AFR_AF': float64
'gnomAD_exomes_controls_AFR_nhomalt': int32
'gnomAD_exomes_controls_AMR_AC': int32
'gnomAD_exomes_controls_AMR_AN': int32
'gnomAD_exomes_controls_AMR_AF': float64
'gnomAD_exomes_controls_AMR_nhomalt': int32
'gnomAD_exomes_controls_ASJ_AC': int32
'gnomAD_exomes_controls_ASJ_AN': int32
'gnomAD_exomes_controls_ASJ_AF': float64
'gnomAD_exomes_controls_ASJ_nhomalt': int32
'gnomAD_exomes_controls_EAS_AC': int32
'gnomAD_exomes_controls_EAS_AN': int32
'gnomAD_exomes_controls_EAS_AF': float64
'gnomAD_exomes_controls_EAS_nhomalt': int32
'gnomAD_exomes_controls_FIN_AC': int32
'gnomAD_exomes_controls_FIN_AN': int32
'gnomAD_exomes_controls_FIN_AF': float64
'gnomAD_exomes_controls_FIN_nhomalt': int32
'gnomAD_exomes_controls_NFE_AC': int32
'gnomAD_exomes_controls_NFE_AN': int32
'gnomAD_exomes_controls_NFE_AF': float64
'gnomAD_exomes_controls_NFE_nhomalt': int32
'gnomAD_exomes_controls_SAS_AC': int32
'gnomAD_exomes_controls_SAS_AN': int32
'gnomAD_exomes_controls_SAS_AF': float64
'gnomAD_exomes_controls_SAS_nhomalt': int32
'gnomAD_exomes_controls_POPMAX_AC': int32
'gnomAD_exomes_controls_POPMAX_AN': int32
'gnomAD_exomes_controls_POPMAX_AF': float64
'gnomAD_exomes_controls_POPMAX_nhomalt': int32
'gnomAD_genomes_flag': str
'gnomAD_genomes_AC': int32
'gnomAD_genomes_AN': int32
'gnomAD_genomes_AF': float64
'gnomAD_genomes_nhomalt': int32
'gnomAD_genomes_AFR_AC': int32
'gnomAD_genomes_AFR_AN': int32
'gnomAD_genomes_AFR_AF': float64
'gnomAD_genomes_AFR_nhomalt': int32
'gnomAD_genomes_AMR_AC': int32
'gnomAD_genomes_AMR_AN': int32
'gnomAD_genomes_AMR_AF': float64
'gnomAD_genomes_AMR_nhomalt': int32
'gnomAD_genomes_ASJ_AC': int32
'gnomAD_genomes_ASJ_AN': int32
'gnomAD_genomes_ASJ_AF': float64
'gnomAD_genomes_ASJ_nhomalt': int32
'gnomAD_genomes_EAS_AC': int32
'gnomAD_genomes_EAS_AN': int32
'gnomAD_genomes_EAS_AF': float64
'gnomAD_genomes_EAS_nhomalt': int32
'gnomAD_genomes_FIN_AC': int32
'gnomAD_genomes_FIN_AN': int32
'gnomAD_genomes_FIN_AF': float64
'gnomAD_genomes_FIN_nhomalt': int32
'gnomAD_genomes_NFE_AC': int32
'gnomAD_genomes_NFE_AN': int32
'gnomAD_genomes_NFE_AF': float64
'gnomAD_genomes_NFE_nhomalt': int32
'gnomAD_genomes_POPMAX_AC': int32
'gnomAD_genomes_POPMAX_AN': int32
'gnomAD_genomes_POPMAX_AF': float64
'gnomAD_genomes_POPMAX_nhomalt': int32
'gnomAD_genomes_controls_AC': int32
'gnomAD_genomes_controls_AN': int32
'gnomAD_genomes_controls_AF': float64
'gnomAD_genomes_controls_nhomalt': int32
'gnomAD_genomes_controls_AFR_AC': int32
'gnomAD_genomes_controls_AFR_AN': int32
'gnomAD_genomes_controls_AFR_AF': float64
'gnomAD_genomes_controls_AFR_nhomalt': int32
'gnomAD_genomes_controls_AMR_AC': int32
'gnomAD_genomes_controls_AMR_AN': int32
'gnomAD_genomes_controls_AMR_AF': float64
'gnomAD_genomes_controls_AMR_nhomalt': int32
'gnomAD_genomes_controls_ASJ_AC': int32
'gnomAD_genomes_controls_ASJ_AN': int32
'gnomAD_genomes_controls_ASJ_AF': float64
'gnomAD_genomes_controls_ASJ_nhomalt': int32
'gnomAD_genomes_controls_EAS_AC': int32
'gnomAD_genomes_controls_EAS_AN': int32
'gnomAD_genomes_controls_EAS_AF': float64
'gnomAD_genomes_controls_EAS_nhomalt': int32
'gnomAD_genomes_controls_FIN_AC': int32
'gnomAD_genomes_controls_FIN_AN': int32
'gnomAD_genomes_controls_FIN_AF': float64
'gnomAD_genomes_controls_FIN_nhomalt': int32
'gnomAD_genomes_controls_NFE_AC': int32
'gnomAD_genomes_controls_NFE_AN': int32
'gnomAD_genomes_controls_NFE_AF': float64
'gnomAD_genomes_controls_NFE_nhomalt': int32
'gnomAD_genomes_controls_POPMAX_AC': int32
'gnomAD_genomes_controls_POPMAX_AN': int32
'gnomAD_genomes_controls_POPMAX_AF': float64
'gnomAD_genomes_controls_POPMAX_nhomalt': int32
'clinvar_id': int32
'clinvar_clnsig': str
'clinvar_trait': str
'clinvar_review': str
'clinvar_hgvs': str
'clinvar_var_source': str
'clinvar_MedGen_id': str
'clinvar_OMIM_id': str
'clinvar_Orphanet_id': str
'Interpro_domain': str
'GTEx_V7_gene': str
'GTEx_V7_tissue': str
'Geuvadis_eQTL_target_gene': str
'locus': locus<GRCh37>
'alleles': array<str>
'chr': str
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Key: ['locus', 'alleles']
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