gnomad_plof_metrics_gene
Versions: 2.1.1
Reference genome builds: GRCh37
Type:
hail.Table
Schema (2.1.1, GRCh37)
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Global fields:
None
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Row fields:
'gene': str
'transcript': str
'obs_mis': int32
'exp_mis': float64
'oe_mis': float64
'mu_mis': float64
'possible_mis': int32
'obs_mis_pphen': int32
'exp_mis_pphen': float64
'oe_mis_pphen': float64
'possible_mis_pphen': int32
'obs_syn': int32
'exp_syn': float64
'oe_syn': float64
'mu_syn': float64
'possible_syn': int32
'obs_lof': int32
'mu_lof': float64
'possible_lof': int32
'exp_lof': float64
'pLI': float64
'pNull': float64
'pRec': float64
'oe_lof': float64
'oe_syn_lower': float64
'oe_syn_upper': float64
'oe_mis_lower': float64
'oe_mis_upper': float64
'oe_lof_lower': float64
'oe_lof_upper': float64
'constraint_flag': str
'syn_z': float64
'mis_z': float64
'lof_z': float64
'oe_lof_upper_rank': int32
'oe_lof_upper_bin': int32
'oe_lof_upper_bin_6': int32
'n_sites': int32
'classic_caf': float64
'max_af': float64
'no_lofs': int32
'obs_het_lof': int32
'obs_hom_lof': int32
'defined': int32
'p': float64
'exp_hom_lof': float64
'classic_caf_afr': float64
'classic_caf_amr': float64
'classic_caf_asj': float64
'classic_caf_eas': float64
'classic_caf_fin': float64
'classic_caf_nfe': float64
'classic_caf_oth': float64
'classic_caf_sas': float64
'p_afr': float64
'p_amr': float64
'p_asj': float64
'p_eas': float64
'p_fin': float64
'p_nfe': float64
'p_oth': float64
'p_sas': float64
'transcript_type': str
'gene_id': str
'transcript_level': int32
'cds_length': int32
'num_coding_exons': int32
'gene_type': str
'gene_length': int32
'exac_pLI': float64
'exac_obs_lof': int32
'exac_exp_lof': float64
'exac_oe_lof': float64
'brain_expression': str
'chromosome': str
'start_position': int32
'end_position': int32
----------------------------------------
Key: ['gene']
----------------------------------------