.. _dbNSFP_genes: dbNSFP_genes ============ * **Versions:** 4.0 * **Reference genome builds:** None * **Type:** :class:`hail.Table` Schema (4.0, None) ~~~~~~~~~~~~~~~~~~ .. code-block:: text ---------------------------------------- Global fields: None ---------------------------------------- Row fields: 'Gene_name': str 'Ensembl_gene': str 'chr': str 'Gene_old_names': str 'Gene_other_names': str 'Uniprot_acc(HGNC/Uniprot)': str 'Uniprot_id(HGNC/Uniprot)': str 'Entrez_gene_id': int32 'CCDS_id': str 'Refseq_id': str 'ucsc_id': str 'MIM_id': str 'OMIM_id': int32 'Gene_full_name': str 'Pathway(Uniprot)': str 'Pathway(BioCarta)_short': str 'Pathway(BioCarta)_full': str 'Pathway(ConsensusPathDB)': str 'Pathway(KEGG)_id': str 'Pathway(KEGG)_full': str 'Function_description': str 'Disease_description': str 'MIM_phenotype_id': str 'MIM_disease': str 'Orphanet_disorder_id': str 'Orphanet_disorder': str 'Orphanet_association_type': str 'Trait_association(GWAS)': str 'GO_biological_process': str 'GO_cellular_component': str 'GO_molecular_function': str 'Tissue_specificity(Uniprot)': str 'Expression(egenetics)': str 'Expression(GNF/Atlas)': str 'Interactions(IntAct)': str 'Interactions(BioGRID)': str 'Interactions(ConsensusPathDB)': str 'P(HI)': float64 'HIPred_score': float64 'HIPred': str 'GHIS': float64 'P(rec)': float64 'Known_rec_info': str 'RVIS_EVS': float64 'RVIS_percentile_EVS': float64 'LoF-FDR_ExAC': float64 'RVIS_ExAC': float64 'RVIS_percentile_ExAC': float64 'ExAC_pLI': float64 'ExAC_pRec': float64 'ExAC_pNull': float64 'ExAC_nonTCGA_pLI': float64 'ExAC_nonTCGA_pRec': float64 'ExAC_nonTCGA_pNull': float64 'ExAC_nonpsych_pLI': float64 'ExAC_nonpsych_pRec': float64 'ExAC_nonpsych_pNull': float64 'gnomAD_pLI': str 'gnomAD_pRec': str 'gnomAD_pNull': str 'ExAC_del.score': float64 'ExAC_dup.score': float64 'ExAC_cnv.score': float64 'ExAC_cnv_flag': str 'GDI': float64 'GDI-Phred': float64 'Gene damage prediction (all disease-causing genes)': str 'Gene damage prediction (all Mendelian disease-causing genes)': str 'Gene damage prediction (Mendelian AD disease-causing genes)': str 'Gene damage prediction (Mendelian AR disease-causing genes)': str 'Gene damage prediction (all PID disease-causing genes)': str 'Gene damage prediction (PID AD disease-causing genes)': str 'Gene damage prediction (PID AR disease-causing genes)': str 'Gene damage prediction (all cancer disease-causing genes)': str 'Gene damage prediction (cancer recessive disease-causing genes)': str 'Gene damage prediction (cancer dominant disease-causing genes)': str 'LoFtool_score': float64 'SORVA_LOF_MAF0.005_HetOrHom': float64 'SORVA_LOF_MAF0.005_HomOrCompoundHet': float64 'SORVA_LOF_MAF0.001_HetOrHom': float64 'SORVA_LOF_MAF0.001_HomOrCompoundHet': float64 'SORVA_LOForMissense_MAF0.005_HetOrHom': float64 'SORVA_LOForMissense_MAF0.005_HomOrCompoundHet': float64 'SORVA_LOForMissense_MAF0.001_HetOrHom': float64 'SORVA_LOForMissense_MAF0.001_HomOrCompoundHet': float64 'Essential_gene': str 'Essential_gene_CRISPR': str 'Essential_gene_CRISPR2': str 'Essential_gene_gene-trap': str 'Gene_indispensability_score': float64 'Gene_indispensability_pred': str 'MGI_mouse_gene': str 'MGI_mouse_phenotype': str 'ZFIN_zebrafish_gene': str 'ZFIN_zebrafish_structure': str 'ZFIN_zebrafish_phenotype_quality': str 'ZFIN_zebrafish_phenotype_tag': str ---------------------------------------- Key: ['Gene_name'] ----------------------------------------