GTEx_transcripts

  • Versions: v7
  • Reference genome builds: GRCh37, GRCh38
  • Type: MatrixTable

Schema (v7, GRCh37)

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Global fields:
    'metadata': struct {
        name: str,
        version: str,
        reference_genome: str,
        n_rows: int32,
        n_cols: int32,
        n_partitions: int32
    }
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Column fields:
    'col_id': str
    'sample_id': str
    'SMATSSCR': int32
    'SMCENTER': str
    'SMPTHNTS': str
    'SMRIN': float64
    'SMTS': str
    'SMTSD': str
    'SMUBRID': str
    'SMTSISCH': int32
    'SMTSPAX': int32
    'SMNABTCH': str
    'SMNABTCHT': str
    'SMNABTCHD': str
    'SMGEBTCH': str
    'SMGEBTCHD': str
    'SMGEBTCHT': str
    'SMAFRZE': str
    'SMGTC': str
    'SME2MPRT': float64
    'SMCHMPRS': int32
    'SMNTRART': float64
    'SMNUMGPS': int32
    'SMMAPRT': float64
    'SMEXNCRT': float64
    'SM550NRM': float64
    'SMGNSDTC': int32
    'SMUNMPRT': float64
    'SM350NRM': float64
    'SMRDLGTH': int32
    'SMMNCPB': float64
    'SME1MMRT': float64
    'SMSFLGTH': int32
    'SMESTLBS': int32
    'SMMPPD': int32
    'SMNTERRT': float64
    'SMRRNANM': int32
    'SMRDTTL': str
    'SMVQCFL': int32
    'SMMNCV': float64
    'SMTRSCPT': int32
    'SMMPPDPR': int32
    'SMCGLGTH': int32
    'SMGAPPCT': float64
    'SMUNPDRD': int32
    'SMNTRNRT': float64
    'SMMPUNRT': float64
    'SMEXPEFF': float64
    'SMMPPDUN': int32
    'SME2MMRT': float64
    'SME2ANTI': int32
    'SMALTALG': int32
    'SME2SNSE': int32
    'SMMFLGTH': int32
    'SME1ANTI': int32
    'SMSPLTRD': int32
    'SMBSMMRT': float64
    'SME1SNSE': int32
    'SME1PCTS': float64
    'SMRRNART': float64
    'SME1MPRT': float64
    'SMNUM5CD': int32
    'SMDPMPRT': float64
    'SME2PCTS': float64
----------------------------------------
Row fields:
    'transcript_id': str
    'gene_id': str
    'transcript_name': str
    'transcript_type': str
    'strand': str
    'transcript_status': str
    'havana_transcript_id': str
    'ccdsid': str
    'ont': str
    'gene_name': str
    'interval': interval<locus<GRCh37>>
    'gene_type': str
    'annotation_source': str
    'havana_gene_id': str
    'gene_status': str
    'tag': str
----------------------------------------
Entry fields:
    'read_count': int32
    'TPM': float64
----------------------------------------
Column key: ['sample_id']
Row key: ['transcript_id']
----------------------------------------