GTEx_eQTL_associations

  • Versions: v7
  • Reference genome builds: GRCh37
  • Type: MatrixTable

Schema (v7, GRCh37)

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Global fields:
    'metadata': struct {
        name: str,
        version: str,
        reference_genome: str,
        n_rows: int32,
        n_cols: int32,
        n_partitions: int32
    }
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Column fields:
    'tissue': str
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Row fields:
    'locus': locus<GRCh37>
    'alleles': array<str>
    'gene_id': str
    'tss_distance': int32
    'maf': float64
    'gene_interval': interval<locus<GRCh37>>
    'gene_name': str
    'strand': str
    'rsid': str
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Entry fields:
    'ma_samples': int32
    'ma_count': int32
    'pval_nominal': float64
    'slope': float64
    'slope_se': float64
    'pval_nominal_threshold': float64
    'min_pval_nominal': float64
    'pval_beta': float64
    'is_significant': bool
    'is_most_significant_variant_per_gene': bool
    'eGenes': struct {
        num_var: int32,
        beta_shape1: float64,
        beta_shape2: float64,
        true_df: float64,
        pval_true_df: float64,
        num_alt_per_site: int32,
        ref_factor: int32,
        pval_perm: float64,
        pval_beta: float64,
        qval: float64,
        log2_aFC: float64,
        log2_aFC_lower: float64,
        log2_aFC_upper: str
    }
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Column key: ['tissue']
Row key: ['locus', 'alleles', 'gene_id']
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