ReferenceGenome
===============

.. currentmodule:: hail.genetics

.. autoclass:: ReferenceGenome()
    :members:
    :no-inherited-members:

    
    
    .. rubric:: Attributes

    .. autosummary::
        :nosignatures:

    
    
    
        ~ReferenceGenome.contigs
    
    
        ~ReferenceGenome.global_positions_dict
    
    
        ~ReferenceGenome.lengths
    
    
        ~ReferenceGenome.mt_contigs
    
    
        ~ReferenceGenome.name
    
    
        ~ReferenceGenome.par
    
    
        ~ReferenceGenome.x_contigs
    
    
        ~ReferenceGenome.y_contigs
    
    
    

    
    

    .. rubric:: Methods

    .. autosummary::
        :nosignatures:

    
    
    
    
    
    
    
    
    
    
        ~ReferenceGenome.add_liftover
    
    
        ~ReferenceGenome.add_sequence
    
    
        ~ReferenceGenome.contig_length
    
    
        ~ReferenceGenome.from_fasta_file
    
    
        ~ReferenceGenome.has_liftover
    
    
        ~ReferenceGenome.has_sequence
    
    
        ~ReferenceGenome.locus_from_global_position
    
    
        ~ReferenceGenome.read
    
    
        ~ReferenceGenome.remove_liftover
    
    
        ~ReferenceGenome.remove_sequence
    
    
        ~ReferenceGenome.write