Genetics functions ------------------ .. currentmodule:: hail.expr.functions .. autosummary:: locus locus_from_global_position locus_interval parse_locus parse_variant parse_locus_interval variant_str call unphased_diploid_gt_index_call parse_call downcode triangle is_snp is_mnp is_transition is_transversion is_insertion is_deletion is_indel is_star is_complex is_strand_ambiguous is_valid_contig is_valid_locus contig_length allele_type pl_dosage gp_dosage get_sequence mendel_error_code liftover min_rep reverse_complement .. autofunction:: locus .. autofunction:: locus_from_global_position .. autofunction:: locus_interval .. autofunction:: parse_locus .. autofunction:: parse_variant .. autofunction:: parse_locus_interval .. autofunction:: variant_str .. autofunction:: call .. autofunction:: unphased_diploid_gt_index_call .. autofunction:: parse_call .. autofunction:: downcode .. autofunction:: triangle .. autofunction:: is_snp .. autofunction:: is_mnp .. autofunction:: is_transition .. autofunction:: is_transversion .. autofunction:: is_insertion .. autofunction:: is_deletion .. autofunction:: is_indel .. autofunction:: is_star .. autofunction:: is_complex .. autofunction:: is_strand_ambiguous .. autofunction:: is_valid_contig .. autofunction:: is_valid_locus .. autofunction:: contig_length .. autofunction:: allele_type .. autofunction:: pl_dosage .. autofunction:: gp_dosage .. autofunction:: get_sequence .. autofunction:: mendel_error_code .. autofunction:: liftover .. autofunction:: min_rep .. autofunction:: reverse_complement