.. _gnomad_plof_metrics_transcript: gnomad_plof_metrics_transcript ============================== * **Versions:** 2.1.1 * **Reference genome builds:** GRCh37 * **Type:** :class:`hail.Table` Schema (2.1.1, GRCh37) ~~~~~~~~~~~~~~~~~~~~~~ .. code-block:: text ---------------------------------------- Global fields: 'rf': struct { variants_by_type: dict, feature_medians: dict, test_intervals: array>>, test_results: array, features_importance: dict, features: array, vqsr_training: bool, no_transmitted_singletons: bool, adj: bool, rf_hash: str, rf_snv_cutoff: struct { bin: int32, min_score: float64 }, rf_indel_cutoff: struct { bin: int32, min_score: float64 } } 'freq_meta': array> 'freq_index_dict': dict 'popmax_index_dict': dict 'age_index_dict': dict 'faf_index_dict': dict 'syn_sd': float64 'mis_sd': float64 'lof_sd': float64 ---------------------------------------- Row fields: 'gene': str 'transcript': str 'canonical': bool 'obs_mis': int64 'exp_mis': float64 'oe_mis': float64 'mu_mis': float64 'possible_mis': int64 'exp_mis_global': array 'obs_mis_global': array 'exp_mis_afr': array 'obs_mis_afr': array 'exp_mis_amr': array 'obs_mis_amr': array 'exp_mis_eas': array 'obs_mis_eas': array 'exp_mis_nfe': array 'obs_mis_nfe': array 'exp_mis_sas': array 'obs_mis_sas': array 'obs_mis_pphen': int64 'exp_mis_pphen': float64 'oe_mis_pphen': float64 'possible_mis_pphen': int64 'obs_syn': int64 'exp_syn': float64 'oe_syn': float64 'mu_syn': float64 'possible_syn': int64 'exp_syn_global': array 'obs_syn_global': array 'exp_syn_afr': array 'obs_syn_afr': array 'exp_syn_amr': array 'obs_syn_amr': array 'exp_syn_eas': array 'obs_syn_eas': array 'exp_syn_nfe': array 'obs_syn_nfe': array 'exp_syn_sas': array 'obs_syn_sas': array 'obs_lof': int64 'mu_lof': float64 'possible_lof': int64 'exp_lof': float64 'exp_lof_global': array 'obs_lof_global': array 'exp_lof_afr': array 'obs_lof_afr': array 'exp_lof_amr': array 'obs_lof_amr': array 'exp_lof_eas': array 'obs_lof_eas': array 'exp_lof_nfe': array 'obs_lof_nfe': array 'exp_lof_sas': array 'obs_lof_sas': array 'pLI': float64 'pNull': float64 'pRec': float64 'oe_lof': float64 'oe_syn_lower': float64 'oe_syn_upper': float64 'oe_mis_lower': float64 'oe_mis_upper': float64 'oe_lof_lower': float64 'oe_lof_upper': float64 'constraint_flag': set 'syn_z': float64 'mis_z': float64 'lof_z': float64 'oe_lof_upper_rank': int64 'oe_lof_upper_bin': int32 'oe_lof_upper_bin_6': int32 'n_sites': int64 'n_sites_array': array 'classic_caf': float64 'max_af': float64 'classic_caf_array': array 'no_lofs': int64 'obs_het_lof': int64 'obs_hom_lof': int64 'defined': int64 'pop_no_lofs': dict 'pop_obs_het_lof': dict 'pop_obs_hom_lof': dict 'pop_defined': dict 'p': float64 'pop_p': dict 'exp_hom_lof': float64 'classic_caf_afr': float64 'classic_caf_amr': float64 'classic_caf_asj': float64 'classic_caf_eas': float64 'classic_caf_fin': float64 'classic_caf_nfe': float64 'classic_caf_oth': float64 'classic_caf_sas': float64 'p_afr': float64 'p_amr': float64 'p_asj': float64 'p_eas': float64 'p_fin': float64 'p_nfe': float64 'p_oth': float64 'p_sas': float64 'transcript_type': str 'gene_id': str 'transcript_level': str 'cds_length': int64 'num_coding_exons': int64 'interval': interval> 'gene_type': str 'gene_length': int32 'exac_pLI': float64 'exac_obs_lof': int32 'exac_exp_lof': float64 'exac_oe_lof': float64 'brain_expression': float64 ---------------------------------------- Key: ['gene', 'transcript'] ----------------------------------------