.. _1000_Genomes_Retracted_autosomes: 1000_Genomes_Retracted_autosomes ================================ * **Versions:** phase_3 * **Reference genome builds:** GRCh38 * **Type:** :class:`hail.MatrixTable` Schema (phase_3, GRCh38) ~~~~~~~~~~~~~~~~~~~~~~~~ .. code-block:: text ---------------------------------------- Global fields: 'metadata': struct { name: str, version: str, reference_genome: str, n_rows: int32, n_cols: int32, n_partitions: int32 } ---------------------------------------- Column fields: 's': str 'population': str 'super_population': str 'is_female': bool 'family_id': str 'relationship_role': str 'maternal_id': str 'paternal_id': str 'children_ids': array 'sibling_ids': array 'second_order_relationship_ids': array 'third_order_relationship_ids': array 'sample_qc': struct { call_rate: float64, n_called: int64, n_not_called: int64, n_hom_ref: int64, n_het: int64, n_hom_var: int64, n_non_ref: int64, n_singleton: int64, n_snp: int64, n_insertion: int64, n_deletion: int64, n_transition: int64, n_transversion: int64, n_star: int64, r_ti_tv: float64, r_het_hom_var: float64, r_insertion_deletion: float64 } ---------------------------------------- Row fields: 'locus': locus 'alleles': array 'rsid': str 'qual': float64 'filters': set 'info': struct { CIEND: int32, CIPOS: int32, CS: str, END: int32, IMPRECISE: bool, MC: array, MEINFO: array, MEND: int32, MLEN: int32, MSTART: int32, SVLEN: array, SVTYPE: str, TSD: str, AC: int32, AF: float64, NS: int32, AN: int32, EAS_AF: float64, EUR_AF: float64, AFR_AF: float64, AMR_AF: float64, SAS_AF: float64, DP: int32, AA: str, VT: str, EX_TARGET: bool, MULTI_ALLELIC: bool, STRAND_FLIP: bool, REF_SWITCH: bool, DEPRECATED_RSID: array, RSID_REMOVED: array, GRCH37_38_REF_STRING_MATCH: bool, NOT_ALL_RSIDS_STRAND_CHANGE_OR_REF_SWITCH: bool, GRCH37_POS: int32, GRCH37_REF: str, ALLELE_TRANSFORM: bool, REF_NEW_ALLELE: bool, CHROM_CHANGE_BETWEEN_ASSEMBLIES: str } 'a_index': int32 'was_split': bool 'old_locus': locus 'old_alleles': array 'variant_qc': struct { AC: array, AF: array, AN: int32, homozygote_count: array, n_called: int64, n_not_called: int64, call_rate: float32, n_het: int64, n_non_ref: int64, het_freq_hwe: float64, p_value_hwe: float64 } ---------------------------------------- Entry fields: 'GT': call ---------------------------------------- Column key: ['s'] Row key: ['locus', 'alleles'] ----------------------------------------