VariantDataset
===================

.. currentmodule:: hail

.. autoclass:: VariantDataset

    
    
    .. rubric:: Attributes

    .. autosummary::
        :nosignatures:

    
        ~VariantDataset.colkey_schema
        ~VariantDataset.genotype_schema
        ~VariantDataset.global_schema
        ~VariantDataset.globals
        ~VariantDataset.num_samples
        ~VariantDataset.rowkey_schema
        ~VariantDataset.sample_annotations
        ~VariantDataset.sample_ids
        ~VariantDataset.sample_schema
        ~VariantDataset.variant_schema
    
    

    
    

    .. rubric:: Methods

    .. autosummary::
        :nosignatures:

    
        ~VariantDataset.__init__
        ~VariantDataset.aggregate_by_key
        ~VariantDataset.annotate_alleles_expr
        ~VariantDataset.annotate_genotypes_expr
        ~VariantDataset.annotate_global
        ~VariantDataset.annotate_global_expr
        ~VariantDataset.annotate_samples_expr
        ~VariantDataset.annotate_samples_table
        ~VariantDataset.annotate_variants_db
        ~VariantDataset.annotate_variants_expr
        ~VariantDataset.annotate_variants_table
        ~VariantDataset.annotate_variants_vds
        ~VariantDataset.cache
        ~VariantDataset.concordance
        ~VariantDataset.count
        ~VariantDataset.count_variants
        ~VariantDataset.deduplicate
        ~VariantDataset.delete_va_attribute
        ~VariantDataset.drop_samples
        ~VariantDataset.drop_variants
        ~VariantDataset.export_gen
        ~VariantDataset.export_genotypes
        ~VariantDataset.export_plink
        ~VariantDataset.export_samples
        ~VariantDataset.export_variants
        ~VariantDataset.export_vcf
        ~VariantDataset.file_version
        ~VariantDataset.filter_alleles
        ~VariantDataset.filter_genotypes
        ~VariantDataset.filter_intervals
        ~VariantDataset.filter_multi
        ~VariantDataset.filter_samples_expr
        ~VariantDataset.filter_samples_list
        ~VariantDataset.filter_samples_table
        ~VariantDataset.filter_variants_expr
        ~VariantDataset.filter_variants_list
        ~VariantDataset.filter_variants_table
        ~VariantDataset.from_table
        ~VariantDataset.genotypes_table
        ~VariantDataset.grm
        ~VariantDataset.hardcalls
        ~VariantDataset.ibd
        ~VariantDataset.ibd_prune
        ~VariantDataset.impute_sex
        ~VariantDataset.join
        ~VariantDataset.ld_matrix
        ~VariantDataset.ld_prune
        ~VariantDataset.linreg
        ~VariantDataset.linreg3
        ~VariantDataset.linreg_burden
        ~VariantDataset.linreg_multi_pheno
        ~VariantDataset.lmmreg
        ~VariantDataset.logreg
        ~VariantDataset.logreg_burden
        ~VariantDataset.make_table
        ~VariantDataset.mendel_errors
        ~VariantDataset.min_rep
        ~VariantDataset.naive_coalesce
        ~VariantDataset.num_partitions
        ~VariantDataset.pc_relate
        ~VariantDataset.pca
        ~VariantDataset.persist
        ~VariantDataset.query_genotypes
        ~VariantDataset.query_genotypes_typed
        ~VariantDataset.query_samples
        ~VariantDataset.query_samples_typed
        ~VariantDataset.query_variants
        ~VariantDataset.query_variants_typed
        ~VariantDataset.rename_samples
        ~VariantDataset.repartition
        ~VariantDataset.rrm
        ~VariantDataset.same
        ~VariantDataset.sample_qc
        ~VariantDataset.sample_variants
        ~VariantDataset.samples_table
        ~VariantDataset.set_va_attributes
        ~VariantDataset.split_multi
        ~VariantDataset.storage_level
        ~VariantDataset.summarize
        ~VariantDataset.tdt
        ~VariantDataset.union
        ~VariantDataset.unpersist
        ~VariantDataset.variant_qc
        ~VariantDataset.variants_table
        ~VariantDataset.vep
        ~VariantDataset.was_split
        ~VariantDataset.write